MolecularBiomarkerOntologyCS

Molecular Biomarker Ontology Codes

activeGenomics Reporting3.0.0complete17 concepts

This (experimental) code system provides for a draft categorization of biomarkers along several axes. Based on ballot feedback, the committee anticipates significant revisions.

Metadata

hl7.org/fhir
Canonical URL
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs
ID
molecular-biomarker-ontology-cs
Version
3.0.0
Publisher
HL7 International / Clinical Genomics
Case Sensitive
Yes
Hierarchy
is-a

Concepts (17)

CodeDisplayDefinition
_physiologyBiomarkerCategoryMolecular biomarker physiologic role categoryA category based on the normal bodily function of the biomarker.
└antibodyantibody categoryMolecular biomarker physiologic role is an antibody.
└antgenantigen categoryMolecular biomarker physiologic role is an antigen.
└cellReceptorcell receptor categoryMolecular biomarker physiologic role is a cell receptor.
└cellReceptorLigandcell receptor ligand categoryMolecular biomarker physiologic role is a cell receptor ligand.
_moleculeTypeBiomarkerCategoryMolecular biomarker molecular type categoryA category based on the type of biomarker molecule.
└carbohydratecarbohydrate categoryMolecular biomarker molecule type is a carbohydrate.
└lipidlipid categoryMolecular biomarker molecule type is a lipid.
└nucleicAcidnucleic acid categoryMolecular biomarker molecule type is a nucleic acid.
└proteinprotein categoryMolecular biomarker molecule type is a protein. Includes single or multi-subunit proteins with or without post-translational modifications.
_methodBiomarkerCategoryMolecular biomarker method type categoryA category based on the measurement ascertainment method of the biomarker. (Methods are drawn from LOINC (https://loinc.org/kb/users-guide/major-parts-of-a-loinc-term/#type-of-method-6th-part) and NCBI Genetic Testing Registry (https://www.ncbi.nlm.nih.gov/gtr/)).
└enzymeAssayenzyme assay categoryMolecular biomarker method is enzyme assay.
└flowCytometryflow cytometry categoryMolecular biomarker method is flow cytometry.
└immuneStainimmune stain categoryMolecular biomarker method is immune stain.
└immunoassayimmunoassay categoryMolecular biomarker method is immunoassay.
└methylationAnalysismethylation analysis categoryMolecular biomarker method is methylation analysis.
└molgenmolecular sequence adjacent categoryMolecular biomarker method is molecular sequence adjacent observation.