ExtensionGenomicStudy_Analysis
R5: Genomic Analysis Event (new)
activeExtensions for Using Data Elements from FHIR R5 in FHIR R40.1.01 context
R5: `GenomicStudy.analysis` (new:BackboneElement)
Metadata
hl7.org/fhir- Canonical URL
- http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis
- ID
- ext-R5-GenomicStudy.analysis
- Name
- ExtensionGenomicStudy_Analysis
Context (1)
This extension can be used on the following elements:
element
Basic| Path | Card. | Type | Flags | Description |
|---|---|---|---|---|
| Extension | 0..* | R5: Genomic Analysis Event (new) | ||
| extension | 0..* | |||
| :identifier | 0..* | R5: Identifiers for the analysis event (new) | ||
| url | 1..1 | fixed: identifier | ||
| value[x] | 0..1 | Identifier | Identifiers for the analysis event | |
| :methodType | 0..* | R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new) | ||
| url | 1..1 | fixed: methodType | ||
| value[x] | 0..1 | CodeableConcept | Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) example | |
| :changeType | 0..* | R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new) | ||
| url | 1..1 | fixed: changeType | ||
| value[x] | 0..1 | CodeableConcept | Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) example | |
| :genomeBuild | 0..1 | R5: Genome build that is used in this analysis (new) | ||
| url | 1..1 | fixed: genomeBuild | ||
| value[x] | 0..1 | CodeableConcept | Genome build that is used in this analysis | |
| :instantiatesCanonical | 0..1 | R5: The defined protocol that describes the analysis (new) | ||
| url | 1..1 | fixed: instantiatesCanonical | ||
| value[x] | 0..1 | canonical | The defined protocol that describes the analysis | |
| :instantiatesUri | 0..1 | R5: The URL pointing to an externally maintained protocol that describes the analysis (new) | ||
| url | 1..1 | fixed: instantiatesUri | ||
| value[x] | 0..1 | uri | The URL pointing to an externally maintained protocol that describes the analysis | |
| :title | 0..1 | R5: Name of the analysis event (human friendly) (new) | ||
| url | 1..1 | fixed: title | ||
| value[x] | 0..1 | string | Name of the analysis event (human friendly) | |
| :focus | 0..* | R5: What the genomic analysis is about, when it is not about the subject of record (new) | ||
| url | 1..1 | fixed: focus | ||
| value[x] | 0..1 | Reference | What the genomic analysis is about, when it is not about the subject of record | |
| :specimen | 0..* | R5: The specimen used in the analysis event (new) | ||
| url | 1..1 | fixed: specimen | ||
| value[x] | 0..1 | Reference | The specimen used in the analysis event | |
| :date | 0..1 | R5: The date of the analysis event (new) | ||
| url | 1..1 | fixed: date | ||
| value[x] | 0..1 | dateTime | The date of the analysis event | |
| :note | 0..* | R5: Any notes capture with the analysis event (new) | ||
| url | 1..1 | fixed: note | ||
| value[x] | 0..1 | Annotation | Any notes capture with the analysis event | |
| :protocolPerformed | 0..1 | R5: The protocol that was performed for the analysis event (new) | ||
| url | 1..1 | fixed: protocolPerformed | ||
| value[x] | 0..1 | Reference | The protocol that was performed for the analysis event | |
| :regionsStudied | 0..* | R5: The genomic regions to be studied in the analysis (BED file) (new) | ||
| url | 1..1 | fixed: regionsStudied | ||
| value[x] | 0..1 | Reference | The genomic regions to be studied in the analysis (BED file) | |
| :regionsCalled | 0..* | R5: Genomic regions actually called in the analysis event (BED file) (new) | ||
| url | 1..1 | fixed: regionsCalled | ||
| value[x] | 0..1 | Reference | Genomic regions actually called in the analysis event (BED file) | |
| :input | 0..* | R5: Inputs for the analysis event (new) | ||
| extension | 0..* | |||
| :file | 0..1 | R5: File containing input data (new) | ||
| url | 1..1 | fixed: file | ||
| value[x] | 0..1 | Reference | File containing input data | |
| :type | 0..1 | R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new) | ||
| url | 1..1 | fixed: type | ||
| value[x] | 0..1 | CodeableConcept | Type of input data (e.g., BAM, CRAM, or FASTA) example | |
| :generatedBy | 0..1 | R5: The analysis event or other GenomicStudy that generated this input file (new) | ||
| url | 1..1 | fixed: generatedBy | ||
| value[x] | 0..1 | IdentifierReference | The analysis event or other GenomicStudy that generated this input file | |
| url | 1..1 | fixed: input | ||
| value[x] | 0..0 | |||
| :output | 0..* | R5: Outputs for the analysis event (new) | ||
| extension | 0..* | |||
| :file | 0..1 | R5: File containing output data (new) | ||
| url | 1..1 | fixed: file | ||
| value[x] | 0..1 | Reference | File containing output data | |
| :type | 0..1 | R5: Type of output data (e.g., VCF, MAF, or BAM) (new) | ||
| url | 1..1 | fixed: type | ||
| value[x] | 0..1 | CodeableConcept | Type of output data (e.g., VCF, MAF, or BAM) example | |
| url | 1..1 | fixed: output | ||
| value[x] | 0..0 | |||
| :performer | 0..* | R5: Performer for the analysis event (new) | ||
| extension | 0..* | |||
| :actor | 0..1 | R5: The organization, healthcare professional, or others who participated in performing this analysis (new) | ||
| url | 1..1 | fixed: actor | ||
| value[x] | 0..1 | Reference | The organization, healthcare professional, or others who participated in performing this analysis | |
| :role | 0..1 | R5: Role of the actor for this analysis (new) | ||
| url | 1..1 | fixed: role | ||
| value[x] | 0..1 | CodeableConcept | Role of the actor for this analysis | |
| url | 1..1 | fixed: performer | ||
| value[x] | 0..0 | |||
| :device | 0..* | R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new) | ||
| extension | 0..* | |||
| :device | 0..1 | R5: Device used for the analysis (new) | ||
| url | 1..1 | fixed: device | ||
| value[x] | 0..1 | Reference | Device used for the analysis | |
| :function | 0..1 | R5: Specific function for the device used for the analysis (new) | ||
| url | 1..1 | fixed: function | ||
| value[x] | 0..1 | CodeableConcept | Specific function for the device used for the analysis | |
| url | 1..1 | fixed: device | ||
| value[x] | 0..0 | |||
| url | 1..1 | fixed: http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis | ||
| value[x] | 0..0 |