MolecularSequence
MolecularSequence
draftResource101 elementsv4.0.1
Raw data describing a biological sequence.
Metadata
hl7.org/fhir- Canonical URL
- http://hl7.org/fhir/StructureDefinition/MolecularSequence
- ID
- MolecularSequence
- Type
- Base Definition
- Derivation
- specialization
- Publisher
- Health Level Seven International (Clinical Genomics)
- Version
- 4.0.1
| Path | Card. | Type | Description |
|---|---|---|---|
MolecularSequence | 0..* | Information about a biological sequence | |
id | 0..1 | string | Logical id of this artifact |
meta | 0..1 | Metadata about the resource | |
implicitRules | 0..1 | uri | A set of rules under which this content was created |
language | 0..1 | code | Language of the resource contentpreferred: languages |
text | 0..1 | Text summary of the resource, for human interpretation | |
contained | 0..* | Resource | Contained, inline Resources |
extension | 0..* | Additional content defined by implementations | |
modifierExtension | 0..* | Extensions that cannot be ignored | |
identifier | 0..* | Unique ID for this particular sequence. This is a FHIR-defined id | |
type | 0..1 | code | aa | dna | rnarequired: sequence-type |
coordinateSystem | 1..1 | integer | Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end) |
patient | 0..1 | Who and/or what this is about | |
specimen | 0..1 | Specimen used for sequencing | |
device | 0..1 | The method for sequencing | |
performer | 0..1 | Who should be responsible for test result | |
quantity | 0..1 | The number of copies of the sequence of interest. (RNASeq) | |
referenceSeq | 0..1 | BackboneElement | A sequence used as reference |
variant | 0..* | BackboneElement | Variant in sequence |
observedSeq | 0..1 | string | Sequence that was observed |
quality | 0..* | BackboneElement | An set of value as quality of sequence |
readCoverage | 0..1 | integer | Average number of reads representing a given nucleotide in the reconstructed sequence |
repository | 0..* | BackboneElement | External repository which contains detailed report related with observedSeq in this resource |
pointer | 0..* | Pointer to next atomic sequence | |
structureVariant | 0..* | BackboneElement | Structural variant |