GenomicStudyDataFormat

Genomic Study Data Format

activeExperimentalcomplete40 conceptsv5.0.0

The data format relevant to genomics. These formats and relevant codes were pulled from Integrative Genomics Viewer Documentation by Broad Institute.

Metadata

hl7.org/fhir
Canonical URL
http://hl7.org/fhir/genomicstudy-dataformat
All-Codes Value Set
http://hl7.org/fhir/ValueSet/genomicstudy-dataformat
ID
genomicstudy-dataformat
Version
5.0.0
Publisher
HL7 (FHIR Project)
Case Sensitive
Yes
In the unified registry

Concepts (40)

bam
BAM
bed
BED
bedpe
BEDPE
bedgraph
BedGraph
bigbed
bigBed
bigWig
bigWig
birdsuite-files
Birdsuite-Files
broadpeak
broadPeak
cbs
CBS
chemical-reactivity-probing-profiles
Chemical-Reactivity-Probing-Profiles
chrom-sizes
chrom-sizes
cn
CN
custom-file-formats
Custom-File-Formats
cytoband
Cytoband
fasta
FASTA
gct
GCT
cram
CRAM
genepred
genePred
gff-gtf
GFF/GTF
gistic
GISTIC
goby
Goby
gwas
GWAS
igv
IGV
loh
LOH
maf-multiple-alignment-format
MAF-Multiple Alignment Format
maf-mutation-annotation-format
MAF-Mutation-Annotation-Format
merged-bam-file
Merged BAM File
mut
MUT
narrowpeak
narrowPeak
psl
PSL
res
RES
rna-secondary-structure-formats
RNA-Secondary-Structure-Formats
sam
SAM
sample-info-attributes-file
Sample-Info-Attributes-file
seg
SEG
tdf
TDF
track-line
Track Line
type-line
Type Line
vcf
VCF
wig
WIG